Plant Biophysics#

Hydroshoot#

Hydroshoot model for 3D hydraulic architecture simulation

HydroShoot is a functional-structural plant modelling package taking into account hydraulic architecture and leaves energy budget and gas exchange.

Authors : Rami Albasha, Christian Fournier, Christophe Pradal

Institutes : INRA, Cirad

Citation : Albasha et al., 2019, https://doi.org/10.1093/insilicoplants/diz007

Source Code : Github

HydroRoot#

openalea.hydroroot is a hydraulic root architecture modelling and a root architecture system generator package.

The OpenAlea.HydroRoot package contains a pure hydraulic solver and a water and solute transport solver.

Authors : Christophe Pradal, Yann Boursiac, Mikael Lucas, Fabrice Bauget, Christophe Godin, Christophe Maurel

Institutes : CIRAD, INRAE, inria, CNRS

Citation : Boursiac et al., 2022, https://doi.org/10.1093/plphys/kiac281, Bauget et al., 2023, https://doi.org/10.1093/jxb/erac471

Source Code : Github

Openalea RATP#

https://readthedocs.org/projects/pyratp/badge/?version=latest

RATP: Radiation Absorption, Transpiration and Photosynthesis

The model RATP (aka OpenAlea.RATP) was designed to simulate the spatial distribution of radiation and leaf-gas exchanges within vegetation canopies as a function of canopy structure, canopy microclimate and physical and physiological leaf properties.

Authors : Herve Sinoquet, Marc Saudreau, Jerome Ngao, Boris Adam, Christophe Pradal, Christian Fournier

Institutes : CIRAD, INRAE, inria, CNRS

Citation : Sinoquet et al., 2001, https://doi.org/10.1046/j.1365-3040.2001.00694.x

Source Code : Github